Arabidopsis protein database

Author: tuvt

August undefined, 2024

WebProtein Subcellular Localization . LocDB is a expert curated database that collects experimental annotations for the subcellular localization of proteins in Human (Homo sapiens) and Weed (Arabidopsis thaliana).The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all … WebAtNoPDB -- Arabidopsis nucleolar protein database. Search for information on 217 nucleolar proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. AtPID -- Arabidopsis thaliana protein interactome database. An integrative platform for plant systems biology.

Arabidopsis proteome and the mass spectral assay library

Web6 feb 2024 · Brandão MM, Dantas LL, Silva-Filho MC. AtPIN: Arabidopsis thaliana protein interaction network. BMC Bioinformatics. 2009;10:454. Article PubMed PubMed Central … Web12 apr 2024 · The superfamily of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins mediates membrane fusion during vesicular transport between endosomes and the plasma membrane in eukaryotic cells, playing a vital role in plant development and responses to biotic and abiotic stresses. Peanut (Arachis … bit whitepaper

DAtA: Database of Arabidopsis thaliana Annotation - PMC

Web28 ott 2006 · SUBA is a MySQL relational database, operating on a UNIX-based system. The non-redundant nuclear protein dataset originally utilized to populate the database was obtained from TIGR contained in the file ATH1.pep (release 5) comprising 28 952 non-redundant proteins. WebANAP integrates 11 Arabidopsis protein interaction databases, comprising 201,699 unique protein interaction pairs, 15,208 identifiers (including 11,931 TAIR AGI codes), … WebAlphaFold Protein Structure Database Functional Analysis Tools for Post-Translational Modifications(FAT-PTM) ... Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana ... Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis. bit width logisim

Arabidopsis antibody resources for functional studies in plants

WebBLAST-able datasets include Arabidopsis thaliana genomic DNA, splice-aligned transcripts and proteins, gene models, and other aligned sequences. Spliced alignment of user … WebEukaryotic Subcellular Localization DataBase (eSLDB) A database of protein subcellular localization which aims to provide an annotation for the entire proteomes of eukaryotic … date and time in laWeb1 gen 2024 · Arabidopsis thaliana Protein Interactome Database (AtPID) is an object database that integrates data from several bioinformatics prediction methods and manually collected information from the literature. It contains data relevant to protein-protein interaction, protein subcellular location, ortholog maps, domain attributes and gene … bit width in

"Web11 mar 2024 · Arabidopsis protein–protein interactions were downloaded from STRING 30 and the number of ... Szklarczyk, D. et al. The STRING database in 2024: quality … " - Arabidopsis protein database

Arabidopsis protein database

Frontiers Heterologous expression of MirMAN enhances root …

Web11 mar 2024 · Arabidopsis protein–protein interactions were downloaded from STRING 30 and the number of ... Szklarczyk, D. et al. The STRING database in 2024: quality-controlled protein-protein ... WebFiles containing protein domains, molecular weights, isoelectric points, TargetP predictions, transmembrane domains, and SCOP structure information for all TAIR proteins. Protocols Contains protocols for growing Arabidopsis and other common laboratory procedures, along with archived Weeds World and Arabidopsis Information Service (AIS) articles.

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Web12 ore fa · For the Western blotting test of the Arabidopsis leaves, the protein content was measured using the method of Bradford (1976). Proteins were separated according to molecular weight by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) on a 10%–14% gradient gel and then transferred to an immobilon-P … WebThis type of analysis requires a paradigm shift because amino acid sequences must be assigned to peptides without relying on existing protein databases. In this review, advances and current limitations of full proteome analysis are briefly highlighted using the model plant Arabidopsis thaliana as an example.

Web22 nov 2024 · Scientific Data - Arabidopsis proteome and the mass spectral assay library. ... No. 10–14) containing additional sequences that are not present in TAIR10 protein … WebEukaryotic Subcellular Localization DataBase (eSLDB) A database of protein subcellular localization which aims to provide an annotation for the entire proteomes of eukaryotic organisms. The database contains the experimental localizations, when available, the homology-based annotations, when feasible, and predictions performed with machine ...

WebPPDB is a Plant Proteome DataBase for Arabidopsis thaliana and maize (Zea mays). Initially PPDB was dedicated to plant plastids, but has now expanded to the whole plant proteome – hence it ... All protein-encoding gene models in … Web1 gen 2024 · The initial version of PCoM-DB (launched in January 2013) included protein complex data for Synechocystis whole cells and Arabidopsis thaliana thylakoid membranes. Here we report PCoM-DB version 2.0, which includes new data sets and analytical tools. Additional data are included from whole cells of the pelagic marine …

Web15 dic 2024 · The availability of full genome sequences and detailed RNA and protein expression databases has greatly increased our understanding of ... S. & Leyser, O. The …

Web23 ago 2004 · PLASdb is a relational database of the nuclear-encoded Arabidopsis proteins (hereinafter proteins) classified according to their pattern of sequence similarity … date and time in london englandhttp://interactome.dfci.harvard.edu/A_thaliana/ date and time in matlabWeb1 gen 2013 · The Arabidopsis Protein Phosphorylation Site Database: Description: The Arabidopsis Protein Phosphorylation Site Database (PhosPhAt 4.0) contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments by different research groups. date and time in melbourneWebWelcome to ProteomicsDB. ProteomicsDB is a multi-omics and multi-organism resource for life science research. It covers e.g. proteomics, transcriptomics, and phenomics data for e.g. human, mouse, arabidopsis and rice. Different visualization are available allowing e.g. a protein- and drug-centric interrogation as well as combined analysis via ... date and time in maWeb26 lug 2024 · The Arabidopsis Protein Phosphorylation Site Database contains large scale proteomic based data from both published and unpublished sources. Data is provided as either a searchable list of identified peptides or ions with annotated phosphorylation site (where available) or as a protein summary page with AGI. date and time in linux date and time in maryland usaWebAlphaFold Protein Structure Database Functional Analysis Tools for Post-Translational Modifications(FAT-PTM) Plant Proteome Database Plant PTM Viewer: Reagents Agrisera (antibody) PhytoAB (antibody) RIKEN BioResource Research Center (Seed/DNA) bitwidth of datapath